The method¶
- The method and its key implementation.
- M. Kühbach et al.On Strong Scaling Parallelized Open Source Tools for Mining Atom Probe Tomography Data:Descriptive Spatial Statistics, Clustering Analyses, Atom Probe Crystallography, and Computational Geometryin preparation for Ultramicroscopy, Q1, 2019
- Solid APT background
- B. Gault and M. P. Moody and J. M. Cairney and S. P. RingerAtom Probe Microscopy1st edition, 2012, Springer New YorkW. Lefebvre and F. Vurpillot and X. SauvageAtom Probe Tomography: Put Theory Into Practice1st edition, 2016, Academic Press
Third-party contributions¶
- Thread-parallelized DBSCAN — HPDBSCAN
- M. Götz and C. Bodenstein and M. RiedelHPDBSCAN: highly parallel DBSCANMLHPC15 Proceedings of the Workshop on Machine Learning in High-Performance Computing Environments2015
- DBScan sequential and threaded
- M. Ester and H.-P. Kriegel and J. Sander and X. XuA Density-Based Algorith for Discovering Clusters in Large Spatial Databases with NoiseProceedings of the 2nd International Conference onKnowledge Discovery and Data Mining (KDD-96), 1996
- Maximum separation method
- J. M. Hyde and C. A. EnglishAn analysis of the structure of irradiation induced Cu-enriched clusters in low and high Nickel weldsProceedings of the MRS Fall Meeting 2000: Symposium R - Microstructural Processes in Irradiated Materials2000, Vol 650 R6.6, 6-12L. T. Stephenson and M. P. Moody and P. V. Liddicoat and S. P. RingerNew techniques for the analysis of fine-scaled clustering phenomena within Atom Probe Tomography (APT) dataMicroscopy & Microanalysis, 2007, Vol 13, 448-463E. A. Jaegle and P.-P. Choi and D. RaabeThe Maximum Separation Cluster Analysis Algorithm for Atom-Probe Tomography:Parameter Determination and AccuracyMicroscopy & Microanalysis, 2014, Vol 20, 1662-1671
- CGAL, the Computational Geometry Algorithms Library
- T. K. F. Da and S. Loriot and M. YvinecCGAL User and Reference Manual: 3D Alpha Shapes2017S. Hert and S. SchirraCGAL User and Reference Manual: 3D Convex Hulls2017
- Alpha Shapes
- H. Edelsbrunner and E. P. MückeThree-Dimensional Alpha ShapesACM Transactions on Graphics1994, 13, 1, 43-72
- Voro
- C. H. RycroftVORO++: A three-dimensional Voronoi cell library in C++Chaos2009, 19, 041111
- Mining crystallographic signal in reconstruction space
- V. J. Araullo-Peters, A. Breen, A. V. Ceguerra, B. Gault, S. P. Ringer, J. M. CairneyA new systematic framework for crystallographic analysis of atom probe dataUltramicroscopy2015, 154, 7-14
- AABBTree
- Lohedges
Computational geometry focused APT method development by other people¶
- Advanced Computational Geometry for APT Processing
- P. Felfer and A. Ceguerra and S. P. Ringer and J. M. CairneyApplying computational geometry techniques for advanced feature analysis in atom probe dataUltramicroscopy2013, 132, 100-106P. Felfer and J. CairneyA computational geometry framework for the optimisation of atom probe reconstructionsUltramicroscopy2016, 169, 62-68
- Robust predicates
- Shewchuk, J. R.Adaptive Precision Floating-Point Arithmetic and Fast Robust Geometric PredicatesComputational Geometry, 1997, 18, p305